All modules for which code is available

• molecular_simulations.analysis.autocluster
• molecular_simulations.analysis.constant_pH_analysis
• molecular_simulations.analysis.cov_ppi
• molecular_simulations.analysis.fingerprinter
• molecular_simulations.analysis.interaction_energy
• molecular_simulations.analysis.ipSAE
• molecular_simulations.analysis.sasa
• molecular_simulations.analysis.utils
• molecular_simulations.build
• molecular_simulations.build.build_amber
• molecular_simulations.build.build_interface
• molecular_simulations.build.build_ligand
• molecular_simulations.data.constant_ph_reference_energies
• molecular_simulations.logging_config
• molecular_simulations.simulate.constantph.constantph
• molecular_simulations.simulate.constantph.logging
• molecular_simulations.simulate.constantph.reference_energy
• molecular_simulations.simulate.free_energy
• molecular_simulations.simulate.mmpbsa
• molecular_simulations.simulate.omm_simulator
• molecular_simulations.simulate.reporters
• molecular_simulations.utils.amber_utils
• molecular_simulations.utils.mda_utils
• molecular_simulations.utils.parsl_settings