molecular_simulations.simulate.constantph namespace

Submodules

• molecular_simulations.simulate.constantph.constantph module
  • ResidueState
    • ResidueState.__init__()
  • ResidueTitration
    • ResidueTitration.__init__()
  • ConstantPH
    • ConstantPH.PROTEIN_RESIDUES
    • ConstantPH.ION_ELEMENTS
    • ConstantPH.WATER_ION_NAMES
    • ConstantPH.TITRATION_H_DIFF
    • ConstantPH.__init__()
    • ConstantPH.setPH()
    • ConstantPH.weights
    • ConstantPH.printTitrationState()
    • ConstantPH.validateStates()
    • ConstantPH.attemptMCStep()
    • ConstantPH.setResidueState()
• molecular_simulations.simulate.constantph.logging module
  • setup_task_logger()
  • JsonFormatter
    • JsonFormatter.__init__()
    • JsonFormatter.format()
• molecular_simulations.simulate.constantph.reference_energy module
  • ReferenceEnergyFinder
    • ReferenceEnergyFinder.__init__()
    • ReferenceEnergyFinder.findReferenceEnergies()