molecular_simulations.utils package

Submodules

• molecular_simulations.utils.amber_utils module
  • assign_chainids()
• molecular_simulations.utils.mda_utils module
  • trim_trajectory()
• molecular_simulations.utils.parsl_settings module
  • BaseSettings
    • BaseSettings.dump_yaml()
    • BaseSettings.from_yaml()
    • BaseSettings.model_config
  • BaseComputeSettings
    • BaseComputeSettings.config_factory()
    • BaseComputeSettings.model_config
  • LocalSettings
    • LocalSettings.available_accelerators
    • LocalSettings.worker_init
    • LocalSettings.nodes
    • LocalSettings.retries
    • LocalSettings.label
    • LocalSettings.worker_port_range
    • LocalSettings.config_factory()
    • LocalSettings.model_config
  • LocalCPUSettings
    • LocalCPUSettings.worker_init
    • LocalCPUSettings.nodes
    • LocalCPUSettings.max_workers_per_node
    • LocalCPUSettings.cores_per_worker
    • LocalCPUSettings.retries
    • LocalCPUSettings.label
    • LocalCPUSettings.worker_port_range
    • LocalCPUSettings.available_accelerators
    • LocalCPUSettings.config_factory()
    • LocalCPUSettings.model_config
  • HeterogeneousSettings
    • HeterogeneousSettings.worker_init
    • HeterogeneousSettings.nodes
    • HeterogeneousSettings.max_workers_per_node
    • HeterogeneousSettings.cores_per_worker
    • HeterogeneousSettings.retries
    • HeterogeneousSettings.worker_port_range
    • HeterogeneousSettings.available_accelerators
    • HeterogeneousSettings.config_factory()
    • HeterogeneousSettings.model_config
  • PolarisSettings
    • PolarisSettings.label
    • PolarisSettings.num_nodes
    • PolarisSettings.worker_init
    • PolarisSettings.scheduler_options
    • PolarisSettings.account
    • PolarisSettings.queue
    • PolarisSettings.walltime
    • PolarisSettings.cpus_per_node
    • PolarisSettings.strategy
    • PolarisSettings.available_accelerators
    • PolarisSettings.config_factory()
    • PolarisSettings.model_config
  • AuroraSettings
    • AuroraSettings.label
    • AuroraSettings.worker_init
    • AuroraSettings.num_nodes
    • AuroraSettings.scheduler_options
    • AuroraSettings.account
    • AuroraSettings.queue
    • AuroraSettings.walltime
    • AuroraSettings.retries
    • AuroraSettings.cpus_per_node
    • AuroraSettings.strategy
    • AuroraSettings.available_accelerators
    • AuroraSettings.config_factory()
    • AuroraSettings.model_config